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Allermatch allergen finder: Input Form

This webpage has three ways of analysis to identify a relationship between your input sequence and an allergen from the database

  • 80 amino acids sliding window. The input sequence is chopped up in 80 amino acids windows. For each 80 amino acids window, the program counts which allergen it hits (with a specific identity).
  • Full Alignment: Use Fasta to perform a full alignment.
  • Wordmatch: Look for an exact hit of 6 amino acids in a sequence in the database

    Copy Paste your Amino Acid sequence here:
    Algorithm:
    Do an 80 amino acids sliding window alignment Cutoff Percentage (only applicable to the 80 amino acids sliding window)
    Look for a small exact wordmatch Wordlength (only applicable to the exact wordmatch search)
    Do a full fasta alignment
    Select a database:

  • Questions: Dr. Gijs Kleter
    Update: UniProt, July 11th, 2012 (448 entries in Allermatchtm), WHO-IUIS last accessed August 12th, 2012 (1003 entries in Allermatchtm).