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Allermatch allergen finder: Input Form

This webpage has three ways of analysis to identify a relationship between your input sequence and an allergen from the database

  • 80 amino acids sliding window. The input sequence is chopped up in 80 amino acids windows. For each 80 amino acids window, the program counts which allergen it hits (with an specific identity).
  • Full Alignment: Use Fasta to perform a full alignment.
  • Wordmatch: Look for an exact hit of 6 amino acids in a sequence in the database

    Copy Paste your Amino Acid sequence here:
    Algorithm:
    Do an 80 amino acids sliding window alignment Cutoff Percentage (only applicable to the 80 amino acids sliding window)
    Look for a small exact wordmatch Wordlength (only applicable to the exact wordmatch search)
    Do a full fasta alignment
    Select a database:

    • Questions: Dr. Gijs Kleter
    Update: UniProt, July 11th, 2012 (448 entries in Allermatchtm), WHO-IUIS last accessed August 12th, 2012 (1003 entries in Allermatchtm).